Physical Learning with Elastic Networks

Note

These pages provide the accompanying documentation of key classes in the physical learning repository, as well as jupyter notebook examples. Updates will be made as the code continues development.

Contents

• Documentation
  • Packing Class
  • Elastic Class
  • Allosteric Class
  • LAMMPS helper modules
• Examples
  • Generating a contact network from a 2D disk packing
  • Generating a contact network from a 3D sphere packing
  • Automatic initialization of an allosteric network
  • Manual intialization of an allosteric network
  • Training an allosteric network
  • Training multiple targets
  • Training an allosteric network at nonzero temperature