Physical Learning
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  • Documentation
    • Packing Class
    • Elastic Class
    • Allosteric Class
    • LAMMPS helper modules
  • Examples
Physical Learning
  • Documentation
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Documentation

  • Packing Class
    • Packing
      • Packing.animate()
      • Packing.coordination()
      • Packing.generate()
      • Packing.initialize()
      • Packing.plot()
      • Packing.rotate()
      • Packing.save()
      • Packing.set_frame()
  • Elastic Class
    • Elastic
      • Elastic.compute_modes()
      • Elastic.energy()
      • Elastic.mean_square_displacement()
      • Elastic.plot_network()
      • Elastic.reset_equilibrium()
      • Elastic.reset_init()
      • Elastic.reset_view()
      • Elastic.rigid_correction()
      • Elastic.rotate_view()
      • Elastic.save()
      • Elastic.set_axes()
      • Elastic.set_frame()
      • Elastic.solve()
  • Allosteric Class
    • Allosteric
      • Allosteric.add_sources()
      • Allosteric.add_targets()
      • Allosteric.animate()
      • Allosteric.color_plot()
      • Allosteric.distribution_plot()
      • Allosteric.mode_plot()
      • Allosteric.mode_tile()
      • Allosteric.plot()
      • Allosteric.plot_source()
      • Allosteric.plot_target()
      • Allosteric.reset_equilibrium()
      • Allosteric.rotate()
      • Allosteric.save()
      • Allosteric.strain()
      • Allosteric.strain_map()
      • Allosteric.strain_plot()
      • Allosteric.strain_plot_thermal()
      • Allosteric.time_lapse()
      • Allosteric.write_job()
      • Allosteric.write_lammps_data()
      • Allosteric.write_lammps_data_learning()
      • Allosteric.write_lammps_input()
  • LAMMPS helper modules
    • get_clusters()
    • load_run()
    • read_data()
    • read_dim()
    • read_dump()
    • read_log()
    • setup_run()
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